FEST and TCR Immunogenomics Core

Overview of Services

Our aim is to provide cost-effective and time-efficient access to cutting-edge genomic technologies and expert assistance with MANAFEST Assay experimental design and execution, next generation TCR beta DNA sequencing and bioinformatics data analysis. The core has been in continuous operation since May 23rd, 2019 and has supported research projects for principle investigators in the Department of Cancer Immunology, and has processed more than 1200 samples. Our lab is equipped with a single-molecule real-time PCR machine, Tape Station, Qbit, as well as the Illumina iSeq 100 next-generation sequencer for short reads. We ensure a full service experience for our clients, starting with project design, all the way through data analysis, figure generation, and publication. We encourage our clients to meet with us before beginning any projects to ensure the most accurate and efficient results. From T cell culture, antigen stimulation, and nucleic acid extraction through analysis, we are your one stop shop for FEST assays and TCR beta sequencing.

Leadership

Kellie Smith, Ph.D. Director
CRB1 Rm 424

Email:  ksmit228@jhmi.edu

Begum Choudhury Manager
CRB1 Room 318
Lab Phone: (410) 614-0198
Email: bchoudh1@jhmi.edu

Jiajia Zhang Senior Data Analyst
Email:zhangjiajia@jhmi.edu

Luis Aparicio Data Analyst
Email:laparic1@jhmi.edu

Location and hours of operation

Hours Location

Hours Open: Monday - Friday 9:30am-6:00pm

Hours Fully Staffed: Monday - Friday 9:30am-6:00pm      

1650 Orleans Street, CRB 1 Room 360

Baltimore, MD 21231

Contacts

Name Role Phone Email Location
Kellie Smith, PhD
Core Director
 
410-502-7523
 
ksmit228@jhmi.edu
 
CRB-1, Room 424
 
Begum Choudhury (Chhuty)
Core Manager
 
410-614-0198
 
bchoudh1@jmhi.edu
 
CRB-1, Room 318