Computational Biology Consulting Core

Overview of Services

The Computational Biology Consulting Core (CBCC) offers state-of-the-art computational biology services to biomedical researchers at the Johns Hopkins University. We offer comprehensive analyses of sequencing data for a variety of genomics and other sequencing-based experiments. We can handle most types of sequencing data, including Illumina, PacBio, 454, and Sanger reads, and we have experience with a variety of sequencing protocols (RNA-seq, Chip-seq, whole-genome sequencing, whole-exome sequencing, etc).

 

Examples of analyses:

  • Transcriptome assembly (RNA-seq)
  • Metagenomics
  • Differential expression
  • ChIP-seq analysis
  • Genome assembly
  • Sequence alignment
  • SNP and structural variant detection

 For all projects, we can arrange to transfer the data directly from the sequencing facility to our computers. We use best practice bioinformatics solutions and can work with you to design custom algorithms and analyses as needed. 

Leadership

Director:

Steven Salzberg , Ph.D.

Bloomberg Distinguished Professor of Biomedical Engineering, Computer Science and Biostatistics

 

Faculty Manager:

Liliana Florea, Ph.D.
Associate Professor of Genetic Medicine and Computer Science
florea@jhu.edu

Location and hours of operation

Hours Location

8:30a-4:00p     

      McKusick-Nathans Institute of Genetic Medicine
      1900 E. Monument St., Welch Medical Library 113
      Baltimore, MD 21205

Links and Resources

  1. Computational Biology Consulting Core

Contacts

Name Role Phone Email Location
Steven Salzberg, Ph.D.
Director
 
(410)614-6112
 
salzberg@jhu.edu
 
Welch Medical Library, Rm 107
 
Liliana Florea, Ph.D.
Faculty Manager
 
(443)287-5624
 
florea@jhu.edu
 
Welch Medical Library Rm. 113
 
Corina Antonescu
Bioinformatics Engineer
 
(443)287-0252
 
acorina@jhu.edu
 
Welch Medical Library Rm. 115A
 
Ann Vukelich
Billing and Administration
 
(410)502-7525 am or (443)287-0231 pm
 
avukeli1@jhmi.edu
 
Welch Medical Library Rm. 115