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Center for Proteomics Discovery

Overview of Services

The Center for Proteomics Discovery has been established at the Johns Hopkins University (JHU) under the directorship of Dr. Akhilesh Pandey to address growing demand for cutting-edge proteomics services at JHU School of Medicine, School of Public Health and Engineering for interdisciplinary research, basic biology and clinical applications.


The Center houses one Orbitrap Fusion Lumos Tribrid ETD mass spectrometer, one Orbitrap Fusion Lumos Tribrid mass spectrometer, state-of-the-art liquid chromatography systems for both online and offline fractionation, tissue extraction systems, lyophilizer and computational infrastructure. Five people are dedicated to the center including two Ph.D. level mass spectrometrists and one Ph.D. level bioinformatician. In addition, we work closely with the laboratory of Dr. Pandey that currently has 15 scientists.


The goal of the Center is to provide and develop methods and technologies to be able to provide advanced mass spectrometry analysis as well as bioinformatics expertise for investigators located both within Johns Hopkins as well as those in academic or corporate institutions outside of Johns Hopkins. The Center will develop new protocols and methods for optimized sample processing, mass spectrometry analysis technologies and data analysis pipelines for clinical samples as well as basic biological samples.


Please contact Chan-Hyun Na, if you have samples to submit.




Akhilesh Pandey, Director 




The website for the Center for Proteomics Discovery


Location and hours of operation

Hours Location

Hours Open: Monday - Friday 9:00am-5:00pm


Hours Staffed: Monday - Friday 10:00am-4:00pm 

Miller Research Building 560 

Service Pricing list

Search available services: View: by category alphabetically
Protein Profiling (7)
PTM identification from a gel band or a purified protein (1)
Global PTM : Phosphorylation (4)
Global PTM : Phosphotyrosine (5)
Global PTM : Acetylation (5)
Global PTM : Ubiquitination (1)
Global PTM : Methyllysine/Methylarginine (4)
Global PTM : Histone code elucidation (2)
Custom analysis (11)
Global PTM : N-glycosylation (5)
Targeted analysis of peptides (1)