SKCCC Experimental and Computational Genomics Core

The Next Generation Sequencing Center (NGSC) is a member of the new Experimental and Computational Genomics Core (ECGC) at SKCCC. The NGSC, Microarry Core, and Bioinformatics core have come together to provide integrated services and educational appropriates for the Johns Hopkins University and cancer center members. 

Overview of Services

We want to make sure that your experiment is done well, from the design stage through sequencing and then analysis.

We try to support any research project. Some common applications include:

• Human exome sequencing
• ChIP-sequencing
• RNA-seq
• DNA methylation analysis
• Eukaryotic and microbial whole genome sequencing
• microRNA sequencing
• Diverse array of custom projects

We can also handle a variety of purely computational requests on a fee-for-service basis.

Please go to our FAQ page for more detailed information.

While we prioritize projects from Cancer Center labs; we efficiently address projects from any other Johns Hopkins investigators.

More information about the core can be found on our website: ecgc.jhmi.edu.

Our Goals:
Innovation
Flexibility
Completeness

Personnel:

Vasan Yegnasubramanian, M.D., Ph.D., Facility Director

Sarah Wheelan, M.D., Ph.D., Bioinformatics Director

Leslie Cope, Ph.D., Bioinformatics Director

Kornel Schuebel, Ph.D., Laboratory Director

Ludmila Danilova, Ph.D.

Lauren Ciotti, Communications Associate

Jennifer Meyers, Lab Manager

Alyza Skaist, MS, Bioinformatics Analyst

Anuj Gupta, MS, Bioinformatics Analyst

Location and hours of operation

Consultation meetings are on Friday mornings from 10AM to 12Noon in CRB1, 192.

Sample drop-off times are on Tuesday and Thursday from 10AM to 11AM and 1PM to 2PM.

Contacts